PausePred

PausePred is designed to predict translational halts using ribosome footprint density information obtained from ribosomal profiling data. The high resolution of the ribosomal profiling technique allows the location and strength of translational pauses to be detected with high precision.

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To predict ribosome pauses please fill in following details:

Input alignment file (Sorted BAM file): Download example: Genome / Transcriptome Reference fasta file: Download example: Genome / Transcriptome Annotation file (optional): Download example:Transcriptome Fold change for Pause: Window Size: Please enter even number window size. Read lengths Window coverage (%): Downstream nucleotide sequence: Upstream nucleotide sequence: Offset values: Please enter equal number of read length and offset values. E-mail address:

PausePred is designed to predict translational halts using ribosome footprint density information obtained from ribosomal profiling data. The high resolution of the ribosomal profiling technique allows the location and strength of translational pauses to be detected with high precision.

To predict ribosome pauses please fill in following details:

If you use this site, please cite: Kumari et al (2018) RNA

If you have any difficulty in using Pausrepred, please contact: pausepred@gmail.com

PausePred is supported by Science Foundation Ireland