Rfeet

Home Help Feedback/Query Contact Standalone version Example files PausePred

To generate profiles please fill in following details:

Upload an alignment file

BAM alignment file1: Input1 name Offset values: Read lengths: Download example:Genome / Transcriptome

Upload a second alignment file (optional)

BAM alignment file2 (optional):Input2 name Offset values: Read lengths: Offset and read length values will be used for non-coverage plot only. Download example: GenomeCoverage plot

Upload reference fasta file.

Reference Fasta file: Download example: Genome / Transcriptome

Enter required plot details

Gene/Transcript/Chr:start-stop: Example: yaaA or chr:3347-4347. For multiple plots, paste comma separated list
Plot type: Absolute Normalized
E-mail address:

To generate profiles please fill in following details:

Upload an alignment file

Upload a second alignment file (optional)

Upload reference fasta file.

Enter required plot details

If you use this site, please cite: Kumari et al (2018) RNA

Contact email: pausepred@gmail.com

Rfeet is supported by Science Foundation Ireland